| | Cross-References from PDB,PIR and SWISS-PROT to ProTherm The following tables show the correspondence between the database entries of PDB, PIR and SWISS-PROT and ProTherm entries. In the case of PDB, Table 2 contains links for PDB entries in which percentage of sequence identity with corresponding ProTherm protein sequence is higher than 95%. These tables can be used to create pointers from these database entries to ProTherm.
1. PDB to ProTherm [100%] ; Table without link Download zip file(updated:Aug. 19 2010)
2. PDB to ProTherm [95% and higher] Download zip file (updated:July 2 2010; 9.5MB compressed file without link)
3. PIR to ProTherm Download zip file(updated:Aug. 19 2010)
4. SWISS-PROT to ProTherm Download zip file(updated:Aug. 19 2010)
Direct linking from PDB to ProTherm entries:
You can link from structural information to corresponding ProTherm
entries by using URL:
http://gibk26.bse.kyutech.ac.jp/cgi-bin/jouhou/protherm/url.pl?ENTRY=****
where **** corresponds to 4-letter PDB ID. You can also specify multiple
PDB IDs separated by comma. Once this information is sent to ProTherm, the
program automatically finds homologues of the structure (95% identity
and higher), and display the list of corresponding ProTherm entries with
some essential information.
Home | 3DinSight | ProTherm | ProNIT | Protein-DNA Recognition | Biomolecules Gallery| |
