Protein-DNA complex (ProNuC)

Base-amino acid interaction (BAInt)

Protein-DNA binding data (ProNIT)
Prediction Tools

Prediction of DNA-binding proteins using Sequence information

Prediction of DNA-binding proteins using Structural information

Prediction of DNA-binding proteins using PSSM information

Calculations of Direct and Indirect Readout specificities and energies for Protein-DNA complexes

Overview

Protein-Nucleic Acid Recognition Databases and Tools is a system to help researchers understand the mechanism of nucleic acid recognition by proteins. The databases consist of Protein-Nucleic Acid Complex Database, which is a collection of structural data of protein-nucleic acid complex; Database of Base-Amino Acid Interactions, which collects structural information of base-amino acid interactions; Thermodynamic Database for Protein-Nucleic Acid Interactions (ProNIT), which is a collection of experimental binding data of protein-nucleic acid interaction. We are also developing tools for predicting binding sites and target genes of transcription factors. These databases and search tool will provide users with insight into the mechanism of protein-nucleic acid recognition from various aspects. The database is directly linked to 3DinSight, an integrated database for structure, function and property of biomolecules.

Please note that this database is still under construction. There will be changes without prior notice.


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